General

• R Studio Add-ins list
• Shiny tutorials
• updateR Package for updating R within R studio (website includes install and usage instructions).
• Icons for diagrams
• Migrating from Excel
• Data viz

Learning R

• Swirl Learn basic R within R.
• Rockefeller University Lots of stuff for learning to use R for bioninformatics, ChIPseq, RNAseq etc..
• sequence motifs good introduction to DNA sequence motifs

Plotting

• ggplot extensions
• gglabeller Shiny app for easily adding labels to ggplots. You can click on individual points or select multiple at once.
• ggThemeAssist Add-in for R Studio that allows you to alter graphical parameters of a ggplot within a nicer GUI and outputs the R code for producing the plot.
• ggedit Shiny app for building ggplots, looks more powerful than theme assist.
• heatmaps
• rvg Package for exporting plots into powerpoint for final aesthetic edits

Writing

• remedy Keyboard shortcuts for RStudio that help you to write more efficiently. Such as Cmd-Ctrl+B for bold fontface.
• citr R Studio add-in that allows you to cite within text written in R. It uses a bibliography file referenced in the document YAML, or can work directly with Zotero library.
• Zotero style library Use to download csl files for citation styles in Rmarkdown
• insertimage R Studio add-in to streamline adding images to markdown documents. Note: the copying files behaviour.
• Tips for images in R markdown Helpful post about managing images in R markdown documents and editing size etc.
• formatting tables using huxtable Package that allows you to easily make nice tables using R dataframes in rmarkdown output
• latex faq

Bio

• gg genes ggplot extension for making gene figures.